PlasmoSIP Help

Usage:

Gene IDs used to search for proteins should match those on PlasmoDB.

Users can also search for proteins using the protein description/common name using the search auto-complete feature.

Example output:

References:

SNP data was obtained from PlasmoDB.

Tajima's D data from Gambian isolates was obtained from the study by Amambua-Ngwa et al., 2012.

Tajima's D data from Guinean isolates was obtained from the study by Mobegi et al., 2014.

Mike Bostock's D3.js library was used extensively for many of the visualisations throughout this site.

The Python Bokeh library was also used for some plots.

Protein structures are visualised using the Javascript PV viewer, and obtained from the RCSB PDB.